Hi there,
I am trying to aggregate netcdf files for some rather large datasets 
with tomcat6.0.36/TDS4.19 - 20131008.1358 and am running into a "Too 
many open files" error.
My catalog scan is:
  <dataset name="ASR 30 km 2d surface analysis"
           ID="ds631.0_anl_2d-AGG"
           urlPath="ds631.0/9/best"
           harvest="true">
     <serviceName>all</serviceName>
     <netcdf 
xmlns="http://www.unidata.ucar.edu/namespaces/netcdf/ncml-2.2">
       <aggregation dimName="time" type="Union">
         <scan location="/glade/p/rda/data/ds631.0/asr30km.anl.2d/" 
suffix=".nc" subdirs="false"/>
       </aggregation>
     </netcdf>
   </dataset>
which contains about 4020 files and totals 470G.
The message that the server sends when trying to access the OPeNDAP 
service is:
Error {
    code = 404;
    message = "/glade/p/rda/data/ds631.0/asr30km.anl.2d/asr30km.anl.2d.20010619.nc 
(Too many open files)";
};
When trying the CdmRemote service catalina.out repeatedly reads:
Oct 24, 2013 11:20:39 AM org.apache.jk.common.ChannelSocket 
acceptConnections
WARNING: Exception executing accept
java.net.SocketException: Too many open files
    at java.net.PlainSocketImpl.socketAccept(Native Method)
    at 
java.net.AbstractPlainSocketImpl.accept(AbstractPlainSocketImpl.java:375)
    at java.net.ServerSocket.implAccept(ServerSocket.java:478)
    at java.net.ServerSocket.accept(ServerSocket.java:446)
    at org.apache.jk.common.ChannelSocket.accept(ChannelSocket.java:311)
    at 
org.apache.jk.common.ChannelSocket.acceptConnections(ChannelSocket.java:668)
    at 
org.apache.jk.common.ChannelSocket$SocketAcceptor.runIt(ChannelSocket.java:879)
    at 
org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:690)
    at java.lang.Thread.run(Thread.java:679)
The cache settings in my threddsConfig.xml are the default settings.
Have I overlooked something?
-kevin.
--
Kevin Manross
NCAR/CISL/Data Support Section
Phone: (303)-497-1218
Email:manross@xxxxxxxx <mailto:manross@xxxxxxxx>
Web:http://rda.ucar.edu