Howdy all!
This morning I did a hdf5 update, and now the following code does not
work, though it did before.
The problem seems to be related to closing the file. I call for strong
file closure, but the close fails anyway. The error output is below.
What am I missing here?
Thanks!
Ed
int
main()
{
hid_t fileid, access_plist, spaceid, typeid;
hid_t datasetid;
hsize_t dims[1];
struct s1 {
unsigned char c1;
double d;
} data[DIM1_LEN];
int i;
for (i=0; i<DIM1_LEN; i++)
{
data[i].c1 = 126;
data[i].d = -9999999;
}
printf("*** Checking packing of HDF5 compound types...");
/* Open file and create group. */
if ((access_plist = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR;
if (H5Pset_fclose_degree(access_plist, H5F_CLOSE_STRONG)) ERR;
if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT,
access_plist)) < 0) ERR;
/* Create a simple compound type. */
if ((typeid = H5Tcreate(H5T_COMPOUND, sizeof(struct s1))) < 0) ERR;
if (H5Tinsert(typeid, "c1", HOFFSET(struct s1, c1), H5T_NATIVE_UCHAR) < 0)
ERR;
if (H5Tinsert(typeid, "d", HOFFSET(struct s1, d), H5T_NATIVE_DOUBLE) < 0)
ERR;
if (H5Tcommit(fileid, COMPOUND_NAME, typeid) < 0) ERR;
/* Create a space. */
dims[0] = DIM1_LEN;
if ((spaceid = H5Screate_simple(1, dims, dims)) < 0) ERR;
/* Create a dataset of this compound type. */
if ((datasetid = H5Dcreate(fileid, VAR_NAME, typeid, spaceid,
H5P_DEFAULT)) < 0) ERR;
/* Write some data. */
if (H5Dwrite(datasetid, typeid, H5S_ALL, H5S_ALL,
H5P_DEFAULT, data) < 0) ERR;
/* Release all resources. */
if (H5Fclose(fileid) < 0) ERR;
This code results in the following error:
HDF5-DIAG: Error detected in HDF5 (1.7.51) thread 0:
#000: H5F.c line 2788 in H5Fclose(): decrementing file ID failed
major: Object atom
minor: Unable to close file
#001: H5F.c line 2577 in H5F_close(): can't close file
major: File accessability
minor: Unable to close file
#002: H5F.c line 2686 in H5F_try_close(): can't close object
major: Object atom
minor: Close failed
#003: H5I.c line 1340 in H5I_dec_ref(): can't locate ID
major: Object atom
minor: Unable to find atom information (already closed?)
#004: H5I.c line 1893 in H5I_search(): invalid type
major: Object atom
minor: Unable to find ID group information
--
Ed Hartnett -- ed@xxxxxxxxxxxxxxxx